Workflow: qiime2 explore sample taxonomic composition
Fetched 2023-01-05 06:54:36 GMT
Verified with cwltool version 3.1.20221201130942
Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/
- Selected
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- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
MIT License
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| table | File | ||
| rep_seqs | File | ||
| classifier | File | ||
| sample_metadata | File | ||
| taxonomy_filename | String | ||
| taxa_bar_plots_filename | String | ||
| taxonomy_visualization_filename | String |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| taxa_barplot |
../tools/qiime2/taxa-barplot.cwl
(CommandLineTool)
|
qiime2: Produce an interactive barplot visualization of taxonomies | |
| classify_features |
../tools/qiime2/feature-classifier-classify-sklearn.cwl
(CommandLineTool)
|
qiime2: Classify reads by taxon using a fitted classifier | |
| tabulate_metadata |
../tools/qiime2/metadata-tabulate.cwl
(CommandLineTool)
|
qiime2: Generate a tabular view of metadata |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| taxa_barplot_file | File | ||
| taxonomy_artifact | File | ||
| taxonomy_visualization_file | File |
Permalink:
https://w3id.org/cwl/view/git/a6a7d5bd034f8ccf01b809bc9f5ecf87e5c5652c/subworkflows/qiime2-08-taxonomic-analysis.cwl
