Workflow: trimming_and_qc_remote.cwl
Fetched 2023-01-08 23:27:26 GMT
Verified with cwltool version 3.1.20221201130942
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
This workflow is Open Source and may be reused according to the terms of:
Apache License 2.0
Note that the tools invoked by the workflow may have separate licenses.
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| fastq_1 | File | ||
| fastq_2 | File | ||
| nthreads | Integer (Optional) |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| qc_1 |
https://raw.githubusercontent.com/ddbj/sapporo-service/master/tests/resources/cwltool/fastqc.cwl
(CommandLineTool)
|
||
| qc_2 |
https://raw.githubusercontent.com/ddbj/sapporo-service/master/tests/resources/cwltool/fastqc.cwl
(CommandLineTool)
|
||
| trimming |
https://raw.githubusercontent.com/ddbj/sapporo-service/master/tests/resources/cwltool/trimmomatic_pe.cwl
(CommandLineTool)
|
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| qc_result_1 | File | ||
| qc_result_2 | File | ||
| trimmed_fastq1P | File | ||
| trimmed_fastq1U | File | ||
| trimmed_fastq2P | File | ||
| trimmed_fastq2U | File |
Permalink:
https://w3id.org/cwl/view/git/b354d35755c4234d2262d80b2b7a42efd5293362/tests/resources/cwltool/trimming_and_qc_remote.cwl
