Workflow: Per-chromosome pindel

Fetched 2023-01-12 05:30:04 GMT
children parents
workflow cluster_inputs Workflow Inputs cluster_outputs Workflow Outputs tumor_cram tumor_cram pindel pindel v0.2.5b8 tumor_cram->pindel tumor_cram reference reference reference->pindel reference chromosome chromosome chromosome->pindel chromosome normal_cram normal_cram normal_cram->pindel normal_cram insert_size insert_size insert_size->pindel insert_size per_chromosome_pindel_out per_chromosome_pindel_out cat cat pindel->cat pindel_outs pindel->cat pindel_outs pindel->cat pindel_outs pindel->cat pindel_outs pindel->cat pindel_outs cat->per_chromosome_pindel_out
Workflow as SVG
  • Selected
  • Default Values
  • Nested Workflows
  • Tools
  • Inputs/Outputs

Inputs

ID Type Title Doc
reference String
chromosome String
tumor_cram File
insert_size Integer
normal_cram File

Steps

ID Runs Label Doc
cat
cat_out.cwl (CommandLineTool)
pindel
pindel.cwl (CommandLineTool)
pindel v0.2.5b8

Outputs

ID Type Label Doc
per_chromosome_pindel_out File
html json turtle jsonld rdfxml svg png dot zip ro yaml raw
Permalink: https://w3id.org/cwl/view/git/eb565eac07209017b12ed79057b40cbf44fb6a0d/pindel/pindel_cat.cwl