- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Unknown workflow license, check
source repository.
Inputs
ID | Type | Title | Doc |
---|---|---|---|
genome | String | ||
vep_data | String | ||
tumor_bam | File | ||
delly_type | String[] | ||
normal_bam | File | ||
tumor_sample_name | String | ||
normal_sample_name | String |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
index |
cmo-index/1.0.0/cmo-index.cwl
(CommandLineTool)
|
cmo-index | |
createTNPair |
module-6.cwl#createTNPair/ca3c2289-1904-4e25-8d87-5e09a103ced3
(CommandLineTool)
|
||
convert_vcf2maf |
cmo-vcf2maf/1.6.16/cmo-vcf2maf.cwl
(CommandLineTool)
|
cmo-vcf2maf |
None |
call_sv_by_delly | |||
merge_with_bcftools |
module-6.cwl#merge_with_bcftools/3ce33131-96c7-4fc3-b592-f5ae2b30b415
(CommandLineTool)
|
||
portal_format_output |
portal-formatting.cli/1.0.0/format-maf.cwl
(Workflow)
|
format-maf | |
merge_with_bcftools_unfiltered |
module-6.cwl#merge_with_bcftools_unfiltered/b2b8f920-51f3-4e6f-928c-099f8b2f3022
(CommandLineTool)
|
Outputs
ID | Type | Label | Doc |
---|---|---|---|
delly_sv | File[] | ||
maf_file | File | ||
merged_file | File | ||
portal_file | File | ||
delly_filtered_sv | File[] | ||
merged_file_unfiltered | File |
Permalink:
https://w3id.org/cwl/view/git/ec73c7be10c97ebd39e3f87ac3601fff58e24d3f/setup/cwl/module-6.cwl