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Term: experimental factor (experimental_factor)

Variable aspects of an experiment design that can be used to describe an experiment, or set of experiments, in an increasingly detailed manner. This field accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI)

URI: MIXS:0000008

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use experimental_factor.

Name Description Checklist/Extension
Mimag Minimum Information About a Metagenome-Assembled Genome Checklist
FoodFoodProductionFacility A collection of terms appropriate when collecting samples and performing sequ... Extension
FoodHumanFoods A collection of terms appropriate when collecting samples and performing sequ... Extension
MigsEu Minimal Information about a Genome Sequence: eukaryote Checklist
MigsVi Minimal Information about a Genome Sequence: virus Checklist
Mims Metagenome or Environmental Checklist
MigsBa Minimal Information about a Genome Sequence: cultured bacteria/archaea Checklist
MimarksS Minimal Information about a Marker Specimen: survey Checklist
Misag Minimum Information About a Single Amplified Genome Checklist
Miuvig Minimum Information About an Uncultivated Virus Genome Checklist
MimarksC Minimal Information about a Marker Specimen: specimen Checklist
MigsPl Minimal Information about a Genome Sequence: plasmid Checklist
FoodAnimalAndAnimalFeed A collection of terms appropriate when collecting samples and performing sequ... Extension
MigsOrg Minimal Information about a Genome Sequence: organelle Checklist

Properties

  • Range: String

  • Cardinality: 0..*

  • Regex pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$

Examples

Value
time series design [EFO:0001779]

Annotations

  • Expected_value: text or EFO and/or OBI

LinkML Source

name: experimental_factor
annotations:
  Expected_value:
    tag: Expected_value
    value: text or EFO and/or OBI
description: Variable aspects of an experiment design that can be used to describe
  an experiment, or set of experiments, in an increasingly detailed manner. This field
  accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for
  Biomedical Investigations (OBI)
title: experimental factor
examples:
- value: time series design [EFO:0001779]
in_subset:
- investigation
from_schema: https://w3id.org/mixs
keywords:
- experimental
- factor
string_serialization: '{termLabel} [{termID}]|{text}'
slot_uri: MIXS:0000008
multivalued: true
alias: experimental_factor
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: ^\S+.*\S+ \[[a-zA-Z]{2,}:\d+\]$