Term: pcr conditions (pcr_cond)

Description of reaction conditions and components of PCR in the form of 'initial denaturation:94degC_1.5min; annealing=...'

URI: MIXS:0000049

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use pcr_cond.

Name	Description	Checklist/Extension
MimarksS	Minimal Information about a Marker Specimen: survey	Checklist
Agriculture	A collection of terms appropriate when sequencing samples obtained in an agri...	Extension
MimarksC	Minimal Information about a Marker Specimen: specimen	Checklist

Properties

• Range: String
• Cardinality: 0..1

Examples

Value
initial denaturation:94_3;annealing:50_1;elongation:72_1.5;final elongation:72_10;35

Annotations

• Expected_value: initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes;total cycles

LinkML Source

name: pcr_cond
annotations:
  Expected_value:
    tag: Expected_value
    value: initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
      elongation:degrees_minutes;total cycles
description: Description of reaction conditions and components of PCR in the form
  of 'initial denaturation:94degC_1.5min; annealing=...'
title: pcr conditions
examples:
- value: initial denaturation:94_3;annealing:50_1;elongation:72_1.5;final elongation:72_10;35
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- condition
- pcr
string_serialization: initial denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
  elongation:degrees_minutes;total cycles
slot_uri: MIXS:0000049
alias: pcr_cond
domain_of:
- MimarksC
- MimarksS
- Agriculture
range: string