Term: annotation (annot)

Tool used for annotation, or for cases where annotation was provided by a community jamboree or model organism database rather than by a specific submitter

URI: MIXS:0000059

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use annot.

Name	Description	Checklist/Extension
Mimag	Minimum Information About a Metagenome-Assembled Genome	Checklist
MigsEu	Minimal Information about a Genome Sequence: eukaryote	Checklist
MigsVi	Minimal Information about a Genome Sequence: virus	Checklist
Mims	Metagenome or Environmental	Checklist
MigsBa	Minimal Information about a Genome Sequence: cultured bacteria/archaea	Checklist
Miuvig	Minimum Information About an Uncultivated Virus Genome	Checklist
Misag	Minimum Information About a Single Amplified Genome	Checklist
Agriculture	A collection of terms appropriate when sequencing samples obtained in an agri...	Extension
MigsPl	Minimal Information about a Genome Sequence: plasmid	Checklist
MigsOrg	Minimal Information about a Genome Sequence: organelle	Checklist

Properties

• Range: String
• Cardinality: 0..1

Examples

Value
prokka

Annotations

• Expected_value: name of tool or pipeline used, or annotation source description

LinkML Source

name: annot
annotations:
  Expected_value:
    tag: Expected_value
    value: name of tool or pipeline used, or annotation source description
description: Tool used for annotation, or for cases where annotation was provided
  by a community jamboree or model organism database rather than by a specific submitter
title: annotation
examples:
- value: prokka
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
string_serialization: '{text}'
slot_uri: MIXS:0000059
alias: annot
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
- Agriculture
range: string