Term: reference database(s) (ref_db)

List of database(s) used for ORF annotation, along with version number and reference to website or publication

URI: MIXS:0000062

Applicable Checklists and Extensions

NOTE: does not include Combinations (of checklists and extensions) that use ref_db.

Name	Description	Checklist/Extension
Mimag	Minimum Information About a Metagenome-Assembled Genome	Checklist
MigsEu	Minimal Information about a Genome Sequence: eukaryote	Checklist
MigsVi	Minimal Information about a Genome Sequence: virus	Checklist
Mims	Metagenome or Environmental	Checklist
MigsBa	Minimal Information about a Genome Sequence: cultured bacteria/archaea	Checklist
Miuvig	Minimum Information About an Uncultivated Virus Genome	Checklist
Misag	Minimum Information About a Single Amplified Genome	Checklist
MigsPl	Minimal Information about a Genome Sequence: plasmid	Checklist
MigsOrg	Minimal Information about a Genome Sequence: organelle	Checklist

Properties

• Range: String
• Cardinality: 0..1

Examples

Value
pVOGs;5;http://dmk-brain.ecn.uiowa.edu/pVOGs/ Grazziotin et al. 2017 doi:10.1093/nar/gkw975

Annotations

• Expected_value: names, versions, and references of databases

LinkML Source

name: ref_db
annotations:
  Expected_value:
    tag: Expected_value
    value: names, versions, and references of databases
description: List of database(s) used for ORF annotation, along with version number
  and reference to website or publication
title: reference database(s)
examples:
- value: pVOGs;5;http://dmk-brain.ecn.uiowa.edu/pVOGs/ Grazziotin et al. 2017 doi:10.1093/nar/gkw975
in_subset:
- sequencing
from_schema: https://w3id.org/mixs
keywords:
- database
string_serialization: '{database};{version};{reference}'
slot_uri: MIXS:0000062
alias: ref_db
domain_of:
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
range: string