Class: Database
An abstract holder for any set of metadata and data. It does not need to correspond to an actual managed database top level holder class. When translated to JSON-Schema this is the 'root' object. It should contain pointers to other objects of interest. For MongoDB, the lists of objects that Database slots point to correspond to collections.
URI: nmdc:Database
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
biosample_set | * Biosample |
This property links a database object to the set of samples within it | direct |
calibration_set | * CalibrationInformation |
This property links a database object to the set of calibrations within it | direct |
collecting_biosamples_from_site_set | * CollectingBiosamplesFromSite |
direct | |
configuration_set | * Configuration |
This property links a database object to the set of configurations within it | direct |
data_generation_set | * DataGeneration |
This property links a database object to the set of data generations within i... | direct |
data_object_set | * DataObject |
This property links a database object to the set of data objects within it | direct |
field_research_site_set | * FieldResearchSite |
direct | |
functional_annotation_agg | * FunctionalAnnotationAggMember |
direct | |
functional_annotation_set | * FunctionalAnnotation |
This property links a database object to the set of all functional annotation... | direct |
genome_feature_set | * GenomeFeature |
This property links a database object to the set of all features | direct |
instrument_set | * Instrument |
This property links a database object to the set of instruments within it | direct |
manifest_set | * Manifest |
This property links a database object to the set of manifests within it | direct |
material_processing_set | * MaterialProcessing |
This property links a database object to the set of material processing withi... | direct |
processed_sample_set | * ProcessedSample |
This property links a database object to the set of processed samples within ... | direct |
storage_process_set | * StorageProcess |
This property links a database object to the set of storage processes within ... | direct |
study_set | * Study |
This property links a database object to the set of studies within it | direct |
workflow_execution_set | * WorkflowExecution |
This property links a database object to the set of workflow executions | direct |
Aliases
- NMDC metadata object
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/nmdc/nmdc
Mappings
Mapping Type | Mapped Value |
---|---|
LinkML Source
Direct
name: Database
description: An abstract holder for any set of metadata and data. It does not need
to correspond to an actual managed database top level holder class. When translated
to JSON-Schema this is the 'root' object. It should contain pointers to other objects
of interest. For MongoDB, the lists of objects that Database slots point to correspond
to **collections**.
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- NMDC metadata object
slots:
- biosample_set
- calibration_set
- collecting_biosamples_from_site_set
- configuration_set
- data_generation_set
- data_object_set
- field_research_site_set
- functional_annotation_agg
- functional_annotation_set
- genome_feature_set
- instrument_set
- manifest_set
- material_processing_set
- processed_sample_set
- storage_process_set
- study_set
- workflow_execution_set
class_uri: nmdc:Database
tree_root: true
Induced
name: Database
description: An abstract holder for any set of metadata and data. It does not need
to correspond to an actual managed database top level holder class. When translated
to JSON-Schema this is the 'root' object. It should contain pointers to other objects
of interest. For MongoDB, the lists of objects that Database slots point to correspond
to **collections**.
from_schema: https://w3id.org/nmdc/nmdc
aliases:
- NMDC metadata object
attributes:
biosample_set:
name: biosample_set
description: This property links a database object to the set of samples within
it.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
mixins:
- object_set
alias: biosample_set
owner: Database
domain_of:
- Database
range: Biosample
multivalued: true
inlined_as_list: true
calibration_set:
name: calibration_set
description: This property links a database object to the set of calibrations
within it.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
mixins:
- object_set
alias: calibration_set
owner: Database
domain_of:
- Database
range: CalibrationInformation
multivalued: true
inlined_as_list: true
collecting_biosamples_from_site_set:
name: collecting_biosamples_from_site_set
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
mixins:
- object_set
alias: collecting_biosamples_from_site_set
owner: Database
domain_of:
- Database
range: CollectingBiosamplesFromSite
multivalued: true
inlined_as_list: true
configuration_set:
name: configuration_set
description: This property links a database object to the set of configurations
within it.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
mixins:
- object_set
alias: configuration_set
owner: Database
domain_of:
- Database
range: Configuration
multivalued: true
inlined_as_list: true
data_generation_set:
name: data_generation_set
description: This property links a database object to the set of data generations
within it.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
mixins:
- object_set
alias: data_generation_set
owner: Database
domain_of:
- Database
range: DataGeneration
multivalued: true
inlined_as_list: true
data_object_set:
name: data_object_set
description: This property links a database object to the set of data objects
within it.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
mixins:
- object_set
alias: data_object_set
owner: Database
domain_of:
- Database
range: DataObject
multivalued: true
inlined_as_list: true
field_research_site_set:
name: field_research_site_set
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
mixins:
- object_set
alias: field_research_site_set
owner: Database
domain_of:
- Database
range: FieldResearchSite
multivalued: true
inlined_as_list: true
functional_annotation_agg:
name: functional_annotation_agg
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: functional_annotation_agg
owner: Database
domain_of:
- Database
range: FunctionalAnnotationAggMember
multivalued: true
inlined: true
inlined_as_list: true
functional_annotation_set:
name: functional_annotation_set
description: This property links a database object to the set of all functional
annotations
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
mixins:
- object_set
alias: functional_annotation_set
owner: Database
domain_of:
- Database
range: FunctionalAnnotation
multivalued: true
inlined_as_list: true
genome_feature_set:
name: genome_feature_set
description: This property links a database object to the set of all features
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
mixins:
- object_set
alias: genome_feature_set
owner: Database
domain_of:
- Database
range: GenomeFeature
multivalued: true
inlined_as_list: true
instrument_set:
name: instrument_set
description: This property links a database object to the set of instruments within
it.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
mixins:
- object_set
alias: instrument_set
owner: Database
domain_of:
- Database
range: Instrument
multivalued: true
inlined_as_list: true
manifest_set:
name: manifest_set
description: This property links a database object to the set of manifests within
it.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
mixins:
- object_set
alias: manifest_set
owner: Database
domain_of:
- Database
range: Manifest
multivalued: true
inlined_as_list: true
material_processing_set:
name: material_processing_set
description: This property links a database object to the set of material processing
within it.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
mixins:
- object_set
alias: material_processing_set
owner: Database
domain_of:
- Database
range: MaterialProcessing
multivalued: true
inlined_as_list: true
processed_sample_set:
name: processed_sample_set
description: This property links a database object to the set of processed samples
within it.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
mixins:
- object_set
alias: processed_sample_set
owner: Database
domain_of:
- Database
range: ProcessedSample
multivalued: true
inlined_as_list: true
storage_process_set:
name: storage_process_set
description: This property links a database object to the set of storage processes
within it.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
mixins:
- object_set
alias: storage_process_set
owner: Database
domain_of:
- Database
range: StorageProcess
multivalued: true
inlined_as_list: true
study_set:
name: study_set
description: This property links a database object to the set of studies within
it.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
mixins:
- object_set
alias: study_set
owner: Database
domain_of:
- Database
range: Study
multivalued: true
inlined_as_list: true
workflow_execution_set:
name: workflow_execution_set
description: This property links a database object to the set of workflow executions.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
mixins:
- object_set
alias: workflow_execution_set
owner: Database
domain_of:
- Database
range: WorkflowExecution
multivalued: true
inlined_as_list: true
class_uri: nmdc:Database
tree_root: true