Slot: insdc_identifiers
Any identifier covered by the International Nucleotide Sequence Database Collaboration
Mixin Usage
| mixed into | description | range | domain |
|---|---|---|---|
| insdc_sra_ena_study_identifiers | identifiers for corresponding project in INSDC SRA / ENA | None | |
| insdc_bioproject_identifiers | identifiers for corresponding project in INSDC Bioproject | None | Study, OmicsProcessing |
| insdc_biosample_identifiers | identifiers for corresponding sample in INSDC | None | Biosample |
| insdc_secondary_sample_identifiers | secondary identifiers for corresponding sample in INSDC | None | |
| insdc_experiment_identifiers | None | OmicsProcessing | |
| insdc_analysis_identifiers | None | ||
| insdc_assembly_identifiers | None | MetatranscriptomeAssembly, MetagenomeAssembly |
Properties
-
Range: String
-
Mixin: True
Aliases
- EBI identifiers
- NCBI identifiers
- DDBJ identifiers
Comments
- note that we deliberately abstract over which of the partner databases accepted the initial submission
- the first letter of the accession indicates which partner accepted the initial submission: E for ENA, D for DDBJ, or S or N for NCBI.
See Also
- https://www.insdc.org/
- https://ena-docs.readthedocs.io/en/latest/submit/general-guide/accessions.html
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/nmdc/nmdc
LinkML Source
name: insdc_identifiers
description: Any identifier covered by the International Nucleotide Sequence Database
Collaboration
comments:
- note that we deliberately abstract over which of the partner databases accepted
the initial submission
- 'the first letter of the accession indicates which partner accepted the initial
submission: E for ENA, D for DDBJ, or S or N for NCBI.'
from_schema: https://w3id.org/nmdc/nmdc
see_also:
- https://www.insdc.org/
- https://ena-docs.readthedocs.io/en/latest/submit/general-guide/accessions.html
aliases:
- EBI identifiers
- NCBI identifiers
- DDBJ identifiers
rank: 1000
mixin: true
alias: insdc_identifiers
range: string