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Slot: qc_comment

Slot to store additional comments about laboratory or workflow output. For workflow output it may describe the particular workflow stage that failed. (ie Failed at call-stage due to a malformed fastq file).

URI: nmdc:qc_comment

Applicable Classes

Name Description Modifies Slot
DissolvingProcess A mixing step where a soluble component is mixed with a liquid component no
MetaproteomicsAnalysis no
MetagenomeAssembly A workflow execution activity that converts sequencing reads into an assemble... no
MaterialProcessing A process that takes one or more samples as inputs and generates one or more ... no
ProtocolExecution A PlannedProces that has PlannedProcess parts no
SubSamplingProcess Separating a sample aliquot from the starting material for downstream activit... no
ReadBasedTaxonomyAnalysis A workflow execution activity that performs taxonomy classification using seq... no
Extraction A material separation in which a desired component of an input material is se... no
DataGeneration The methods and processes used to generate omics data from a biosample or org... no
ChemicalConversionProcess A process that results in the interconversion of chemical species by a reacti... no
ChromatographicSeparationProcess The process of using a selective partitioning of the analyte or interferent b... no
WorkflowExecution Represents an instance of an execution of a particular workflow no
LibraryPreparation no
FiltrationProcess The process of segregation of phases; e no
StorageProcess A planned process with the objective to preserve and protect material entitie... no
NomAnalysis no
ReadQcAnalysis A workflow execution activity that performs quality control on raw Illumina r... no
Pooling physical combination of several instances of like material no
MetagenomeSequencing Initial sequencing activity that precedes any analysis no
MetatranscriptomeAnnotation no
MassSpectrometry Spectrometry where the sample is converted into gaseous ions which are charac... no
MetabolomicsAnalysis no
CollectingBiosamplesFromSite no
MetagenomeAnnotation A workflow execution activity that provides functional and structural annotat... no
PlannedProcess no
MetatranscriptomeAssembly no
NucleotideSequencing A DataGeneration in which the sequence of DNA or RNA molecules is generated no
MetatranscriptomeExpressionAnalysis A workflow process that provides expression values and read counts for gene f... no
MixingProcess The combining of components, particles or layers into a more homogeneous stat... no
MagsAnalysis A workflow execution activity that uses computational binning tools to group ... no

Properties

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value

LinkML Source

name: qc_comment
description: Slot to store additional comments about laboratory or workflow output.
  For workflow output it may describe the particular workflow stage that failed. (ie
  Failed at call-stage due to a malformed fastq file).
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
alias: qc_comment
domain_of:
- PlannedProcess
range: string