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Slot: scaf_l50

Given a set of scaffolds, the L50 is defined as the sequence length of the shortest scaffold at 50% of the total genome length.

URI: nmdc:scaf_l50

Inheritance

Applicable Classes

Name Description Modifies Slot
MetagenomeAssembly A workflow execution activity that converts sequencing reads into an assemble... no
MetatranscriptomeAssembly no

Properties

Identifier and Mapping Information

Schema Source

LinkML Source

name: scaf_l50
description: Given a set of scaffolds, the L50 is defined as the sequence length of
  the shortest scaffold at 50% of the total genome length.
from_schema: https://w3id.org/nmdc/nmdc
rank: 1000
is_a: metagenome_assembly_parameter
alias: scaf_l50
domain_of:
- MetagenomeAssembly
- MetatranscriptomeAssembly
range: float